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CODE OCEAN BLOG

Category: Compute Capsules

Drug Sensitivity Prediction From Cell Line-Based Pharmacogenomics Data

Simon Adar
October 4, 2021

Drug Sensitivity Prediction From Cell Line-Based Pharmacogenomics Data: Guidelines for Developing Machine Learning Models Hossein Sharifi Noghabi1, Petr Smirnov2, Soheil Jahangiri-Tazehkand2, Anthony Mammoliti2, Sisira Kadambat Nair3, Casey Hon2, Arvind Mehr3,

Cancer Cell Biology, Capsule, Genomics, Pharmacogenomics, R, Ubuntu

Cancer Pharmacogenomic Toolbox – CCLE Capsule

Code Ocean
July 12, 2021

Cancer Pharmacogenomic Toolbox – CCLE Capsule Author(s): Benjamin Haibe-Kains, University Health Network View Capsule Read publication Environment R Studio Shiny-server Ubuntu Packages: Bioconductor PharmacoGx Code R Data The Cancer Cell

Cancer Cell Biology, Capsule, CCLE, Gene Signature, Multi-Omics, Pharmacogenomics, R, Ubuntu

MetaGxData V2: Cancer Datasets Generate Multi-Cancer Signature Capsule

Code Ocean
May 25, 2021

MetaGXData V2: Cancer Datasets Gen Multi-Cancer Gene Signature Capsule Author(s): Benjamin Haibe-Kains, University Health Network Michael Zon, McMaster University Deena Gendoo, University of Birmingham View Capsule Read publication Environment R

App Panel, Cancer Cell Biology, Capsule, Gene Signature, MetaGxData, R, Ubuntu

Combo Synergy of Two Drugs Capsule

Code Ocean
May 14, 2021

Combo Synergy of Two Drugs Capsule Author(s): Jennifer O’Neil, Yair Benita, Igor Feldman, Melissa Chenard, Brian Roberts, Yaping Liu, Jing Li, Astrid Kral, Serguei Lejnine, Andrey Loboda, William Arthur, Razvan

App Panel, Cancer Cell Biology, Capsule, Debian, R, Synergistic Drug Combination

Differential Analyses for RNA-seq Capsule

Code Ocean
March 30, 2021

Differential analyses for RNA-seq: transcript-level estimates improve gene-level inferences Author(s): Charlotte Soneson Institute for Molecular Life Sciences, University of Zurich, Zurich, 8057, Switzerland; SIB Swiss Institute of Bioinformatics, University of

Capsule, R, RNA-sequencing

RNA-seq Capsule

Code Ocean
March 19, 2021

RNA-Seq workflow: gene-level exploratory analysis and differential expression Author(s): Mike Love Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute and Department of Biostatistics, Harvard TH Chan School of Public

Capsule, R, RNA-sequencing

Voter Fraud Capsule

Simon Adar
March 19, 2021

No Evidence for Voter Fraud: A Guide to Statistical Claims About the 2020 Election Author(s): Andrew C. Eggers University of Chicago Haritz Garro Stanford University Justin Grimmer Stanford University View

Capsule, Culture, GitHub, Random Forest

Monet For Analyzing scRNA-Seq Data Capsule

Code Ocean
March 15, 2021

Monet: An open-source Python package for analyzing and integrating scRNA-Seq data using PCA-based latent spaces Author(s): Florian Wagner, Department of Medicine, University of Chicago View Capsule Read publication Environment Python

Capsule, python, RNA-sequencing

Category: Compute Capsules

Drug Sensitivity Prediction From Cell Line-Based Pharmacogenomics Data

Cancer Pharmacogenomic Toolbox – CCLE Capsule

MetaGxData V2: Cancer Datasets Generate Multi-Cancer Signature Capsule

Combo Synergy of Two Drugs Capsule

Differential Analyses for RNA-seq Capsule

RNA-seq Capsule

Voter Fraud Capsule

Monet For Analyzing scRNA-Seq Data Capsule

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