Computational biology and bioinformatics
Scalable, reproducible computational research for biotech and pharma
Code Ocean helps computational teams provision compute, set up environments, develop analysis, scale powerful pipelines, and automatically create a reproducible, traceable record of their work.
Trusted by hundreds of computational scientists and bioinformaticians:
Most computational research relies on costly, time-consuming manual workflows and custom systems.
Code Ocean makes it easy to provision, scale, collaborate, and reproduce computational scientific research.
Provision compute, launch cloud workstations
Set up new environments with built-in automation while Code Ocean generates your Dockerfile in the background. Attach data of any size, develop in your preferred IDE and language, then deploy to the cloud in one click.
Drag and drop to build bioinformatics pipelines
Drag and drop different capsules to build Pipelines, while Code Ocean generates Nextflow in the background (or import from nf-core). Adjust compute resource for each step, then run automatically on AWS Batch.
Trace all your results, then reproduce and share your work
See the provenance of all results with the Lineage Graph. All development is tracked with Git, every asset can be shared with role-based access control. No lock-in: export anything, at any time, and run it anywhere else.
“What I love about Code Ocean is how the platform facilitates more seamless collaboration and awareness of what our different groups are doing and how it is better wired together, throughout the company.”
"Code Ocean enabled us to move from individual mode to true teamwork and allowed us to develop standards for the group and share code efficiently. We improved as we moved while being able to reproduce every result."
"Code Ocean totally solves tracking and reproducing analysis for researchers and increases trust in the results."
"Code Ocean helps us meet the "FAIR" standards of making our work Findable, Accessible, Interoperable, and Reproducible."
Code Ocean runs on Compute Capsules
Compute Capsules are a versionable, traceable, reproducible containerization of the code, data, and environments used in computational research, as well as the result data they produce. They automate environment setup, have compute management built in, and can be shared with others to co-develop or clone and adapt.
FAIRR 101: Computational tools for FAIRR analytics
Feb 29, 2024 | 12pm EST
Join us for a webinar exploring: